\documentclass[a4paper]{book}
\usepackage{makeidx}
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\usepackage[titles]{tocloft}
\usepackage{doxygen}
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\begin{document}
\hypersetup{pageanchor=false,citecolor=blue}
\begin{titlepage}
\vspace*{7cm}
\begin{center}
{\Large \-N\-M\-Q\-J }\\
\vspace*{1cm}
{\large \-Generated by Doxygen 1.7.6.1}\\
\vspace*{0.5cm}
{\small Fri Sep 21 2012 11:15:51}\\
\end{center}
\end{titlepage}
\clearemptydoublepage
\pagenumbering{roman}
\tableofcontents
\clearemptydoublepage
\pagenumbering{arabic}
\hypersetup{pageanchor=true,citecolor=blue}
\chapter{\-Deprecated \-List}
\label{deprecated}
\hypertarget{deprecated}{}
\input{deprecated}
\chapter{\-Class \-Index}
\input{hierarchy}
\chapter{\-Class \-Index}
\input{annotated}
\chapter{\-File \-Index}
\input{files}
\chapter{\-Class \-Documentation}
\input{classalgorithm}
\input{classchannels}
\input{classdtcl4}
\input{classeffective__ensemble}
\input{classhamilton}
\input{classHamiltonian}
\input{classJumpOp}
\input{classjumppaths}
\input{classMyRandom}
\input{classoutput}
\input{classrate}
\input{classsimulation}
\input{classSimulationParams}
\input{classsystem}
\input{classTiXmlAttribute}
\input{classTiXmlAttributeSet}
\input{classTiXmlBase}
\input{classTiXmlComment}
\input{structTiXmlCursor}
\input{classTiXmlDeclaration}
\input{classTiXmlDocument}
\input{classTiXmlElement}
\input{classTiXmlHandle}
\input{classTiXmlNode}
\input{classTiXmlOutStream}
\input{classTiXmlPrinter}
\input{classTiXmlString}
\input{classTiXmlText}
\input{classTiXmlUnknown}
\input{classTiXmlVisitor}
\chapter{\-File \-Documentation}
\input{algorithm_8hpp}
\input{channels_8hpp}
\input{dtcl4_8hpp}
\input{effective__ensemble_8hpp}
\input{hamilton_8hpp}
\input{random_8hpp}
\input{rate_8hpp}
\input{simulation_8hpp}
\input{system_8hpp}
\input{transition__map_8hpp}
\printindex
\end{document}
